From schnetter at cct.lsu.edu Fri Dec 4 19:07:28 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 01:07:28 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase README" Message-ID: <20091205010728.B603B2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase In directory asylum.cct.lsu.edu:/tmp/cvs-serv14005 Modified Files: README Log Message: Update and standardise README From schnetter at cct.lsu.edu Fri Dec 4 19:07:52 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 01:07:52 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase configuration.ccl" Message-ID: <20091205010752.107EB2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase In directory asylum.cct.lsu.edu:/tmp/cvs-serv14015 Modified Files: configuration.ccl Log Message: Remove white space From schnetter at cct.lsu.edu Fri Dec 4 20:14:32 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 02:14:32 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusBase/IOASCII/src Startup.c" Message-ID: <20091205021432.3463B2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusBase/IOASCII/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv14804/src Modified Files: Startup.c Log Message: Correct prototyp of IOASCII's Startup routine From schnetter at cct.lsu.edu Fri Dec 4 20:25:15 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 02:25:15 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOHDF5/src Write.c" Message-ID: <20091205022515.6A6172C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOHDF5/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv14917 Modified Files: Write.c Log Message: Include missing header file From schnetter at cct.lsu.edu Fri Dec 4 20:26:51 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 02:26:51 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOHDF5/src Write.c" Message-ID: <20091205022651.219912C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOHDF5/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv14933 Modified Files: Write.c Log Message: Correct header file name From schnetter at cct.lsu.edu Fri Dec 4 21:05:34 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:05:34 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusBase/IOUtil/src Utils.c ioutil_Utils.h" Message-ID: <20091205030534.DED4B2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusBase/IOUtil/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15408/src Modified Files: Utils.c ioutil_Utils.h Log Message: IOUtil: Update parsing API to allow output by simulation time Update the parsing API to allow output by simulation time (out_dt) in addition to output by iteration (out_every). This adds an additional parameter to IOUtil_ParseVarsForOutput. From schnetter at cct.lsu.edu Fri Dec 4 21:07:04 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:07:04 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusBase/IOASCII/src Output1D.c Output2D.c Output3D.c" Message-ID: <20091205030704.965452C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusBase/IOASCII/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15424/src Modified Files: Output1D.c Output2D.c Output3D.c Log Message: IOASCII: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:07:56 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:07:56 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOFlexIO/src DumpGH.c Output.c Output2D.c" Message-ID: <20091205030756.4917E2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOFlexIO/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15443/IOFlexIO/src Modified Files: DumpGH.c Output.c Output2D.c Log Message: IOFlexIO: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:08:09 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:08:09 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOHDF5/src Output.c" Message-ID: <20091205030809.191BC2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOHDF5/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15448/IOHDF5/src Modified Files: Output.c Log Message: IOHDF5: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:08:21 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:08:21 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOHDF5Util/src DumpUtils.c" Message-ID: <20091205030821.335872C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOHDF5Util/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15453/IOHDF5Util/src Modified Files: DumpUtils.c Log Message: IOHDF5Util: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:08:33 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:08:33 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOPanda/src Output.c" Message-ID: <20091205030833.F3EE92C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOPanda/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15458/IOPanda/src Modified Files: Output.c Log Message: IOPanda: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:10:04 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:10:04 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOStreamedHDF5/src Output.c" Message-ID: <20091205031004.013C72C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOStreamedHDF5/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15467/IOStreamedHDF5/src Modified Files: Output.c Log Message: IOStreamedHDF5: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:10:40 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:10:40 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusExamples/SampleIO/src Output.c" Message-ID: <20091205031040.209C82C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusExamples/SampleIO/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15543/SampleIO/src Modified Files: Output.c Log Message: SampleIO: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:11:55 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:11:55 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusIO/IOJpeg/src Output.c" Message-ID: <20091205031155.9880D2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusIO/IOJpeg/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv15568/IOJpeg/src Modified Files: Output.c Log Message: IOJpeg: Adapt to the new parsing API in IOUtil From schnetter at cct.lsu.edu Fri Dec 4 21:13:03 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:13:03 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusBase/Time schedule.ccl" Message-ID: <20091205031303.678DF2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusBase/Time In directory asylum.cct.lsu.edu:/tmp/cvs-serv15582/Time Modified Files: schedule.ccl Log Message: Beautify white space From schnetter at cct.lsu.edu Fri Dec 4 21:13:38 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 03:13:38 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusExamples/WaveToy2DF77 interface.ccl schedule.ccl" Message-ID: <20091205031338.106402C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusExamples/WaveToy2DF77 In directory asylum.cct.lsu.edu:/tmp/cvs-serv15596/WaveToy2DF77 Modified Files: interface.ccl schedule.ccl Log Message: Beautify white space From schnetter at cct.lsu.edu Fri Dec 4 23:10:46 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 05:10:46 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusWave/WaveBinarySource interface.ccl schedule.ccl" Message-ID: <20091205051047.851282C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusWave/WaveBinarySource In directory asylum.cct.lsu.edu:/tmp/cvs-serv18249 Modified Files: interface.ccl schedule.ccl Log Message: Correct and clean up WaveBinarySource: Multiply the RHS with the time step size. Use the correct time when evaluating the RHS. Use the correct time step size on refined levels. Place the sources at z=0 instead of at the center of the domain. This is relevant for bitant mode, where the sources should still be at z=0, not at the center of the simulated domain. Remove complex logic to determine which processors should apply the source term; instead, apply it on all processors. Small other cleanups. From schnetter at cct.lsu.edu Fri Dec 4 23:10:48 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 05:10:48 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusWave/WaveBinarySource/src CoordinateStuff.c WaveBinary.c make.code.defn" Message-ID: <20091205051048.44FAB2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusWave/WaveBinarySource/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv18249/src Modified Files: CoordinateStuff.c WaveBinary.c make.code.defn Log Message: Correct and clean up WaveBinarySource: Multiply the RHS with the time step size. Use the correct time when evaluating the RHS. Use the correct time step size on refined levels. Place the sources at z=0 instead of at the center of the domain. This is relevant for bitant mode, where the sources should still be at z=0, not at the center of the simulated domain. Remove complex logic to determine which processors should apply the source term; instead, apply it on all processors. Small other cleanups. From schnetter at cct.lsu.edu Sat Dec 5 10:42:38 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Sat, 5 Dec 2009 16:42:38 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusBase/IOUtil/src ioutil_Utils.h" Message-ID: <20091205164238.2C2622C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusBase/IOUtil/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv25412/src Modified Files: ioutil_Utils.h Log Message: IOUtil: Advertise that this is the new version of this API Advertise that this is the new version of this API, which has 'out_dt' arguments in certain IOUtil_* functions: #define IOUTIL_PARSER_HAS_OUT_DT 1 From schnetter at cct.lsu.edu Mon Dec 7 10:17:22 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Mon, 7 Dec 2009 16:17:22 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase/src StartUp.c" Message-ID: <20091207161722.789622C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv27738/src Modified Files: StartUp.c Log Message: Remove unneeded #include statements From schnetter at cct.lsu.edu Mon Dec 7 10:56:16 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Mon, 7 Dec 2009 16:56:16 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase interface.ccl param.ccl schedule.ccl" Message-ID: <20091207165616.DCD2D2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase In directory asylum.cct.lsu.edu:/tmp/cvs-serv28123 Modified Files: interface.ccl param.ccl schedule.ccl Log Message: Add a parameter "initial_hydro" to HydroBase with a default setting of "zero". This parameter, which can be extended by hydro initial data thorns, determines which hydro thorn is setting up initial data. The default setting "zero" is implemented by HydroBase itself, setting all hydro variables to zero. This corresponds to a vacuum, but without atmosphere. Reformat and/or clarify some comments in the ccl files. From schnetter at cct.lsu.edu Mon Dec 7 10:56:17 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Mon, 7 Dec 2009 16:56:17 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase/src Initialisation.c" Message-ID: <20091207165617.0A77A2C002@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv28123/src Modified Files: Initialisation.c Log Message: Add a parameter "initial_hydro" to HydroBase with a default setting of "zero". This parameter, which can be extended by hydro initial data thorns, determines which hydro thorn is setting up initial data. The default setting "zero" is implemented by HydroBase itself, setting all hydro variables to zero. This corresponds to a vacuum, but without atmosphere. Reformat and/or clarify some comments in the ccl files. From schnetter at cct.lsu.edu Mon Dec 7 11:12:39 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Mon, 7 Dec 2009 17:12:39 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase/src Initialisation.c" Message-ID: <20091207171239.CE8532C002@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv28353/src Modified Files: Initialisation.c Log Message: Add a new group "Bvec" to HydroBase, containing the magnetic field. Same as the velocity "vel", this is a vector group with three components. There are also two new parameters "initial_Bvec" with default value "none", specifying that Bvec does not have storage. This keeps things backward compatible. Another parameter "Bvec_evolution_method" specifies its method; the default value is also "none". These parameters need to be extended by initial data and evolution thorns that handle magnetic fields. From schnetter at cct.lsu.edu Mon Dec 7 11:12:39 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Mon, 7 Dec 2009 17:12:39 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase interface.ccl param.ccl schedule.ccl" Message-ID: <20091207171239.AD9FC2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase In directory asylum.cct.lsu.edu:/tmp/cvs-serv28353 Modified Files: interface.ccl param.ccl schedule.ccl Log Message: Add a new group "Bvec" to HydroBase, containing the magnetic field. Same as the velocity "vel", this is a vector group with three components. There are also two new parameters "initial_Bvec" with default value "none", specifying that Bvec does not have storage. This keeps things backward compatible. Another parameter "Bvec_evolution_method" specifies its method; the default value is also "none". These parameters need to be extended by initial data and evolution thorns that handle magnetic fields. From knarf at cct.lsu.edu Mon Dec 7 11:17:17 2009 From: knarf at cct.lsu.edu (Frank Loeffler (knarf)) Date: Mon, 7 Dec 2009 17:17:17 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusPUGHIO/IOHDF5/src/util hdf5_convert_from_ieeeio.c" Message-ID: <20091207171717.EA1F92C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusPUGHIO/IOHDF5/src/util In directory asylum.cct.lsu.edu:/tmp/cvs-serv28416 Modified Files: hdf5_convert_from_ieeeio.c Log Message: add missing header file From knarf at cct.lsu.edu Tue Dec 8 13:16:04 2009 From: knarf at cct.lsu.edu (Frank Loeffler (knarf)) Date: Tue, 8 Dec 2009 19:16:04 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/ADMConstraints schedule.ccl" Message-ID: <20091208191604.F381F2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/ADMConstraints In directory asylum.cct.lsu.edu:/tmp/cvs-serv12903 Modified Files: schedule.ccl Log Message: Ian Hinder: Schedule the computation of the constraints in CCTK_POSTREGRID and CCTK_POSTRESTRICT. Previously, the constraints would have contained undefined (or poison) values after regridding. From schnetter at cct.lsu.edu Tue Dec 8 13:46:35 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Tue, 8 Dec 2009 19:46:35 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase interface.ccl" Message-ID: <20091208194635.D72EA2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase In directory asylum.cct.lsu.edu:/tmp/cvs-serv13193 Modified Files: interface.ccl Log Message: Document units From schnetter at cct.lsu.edu Tue Dec 8 13:46:36 2009 From: schnetter at cct.lsu.edu (Erik Schnetter (schnetter)) Date: Tue, 8 Dec 2009 19:46:36 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusEinstein/HydroBase/doc documentation.tex" Message-ID: <20091208194636.031982C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusEinstein/HydroBase/doc In directory asylum.cct.lsu.edu:/tmp/cvs-serv13193/doc Modified Files: documentation.tex Log Message: Document units From knarf at cct.lsu.edu Wed Dec 9 13:23:02 2009 From: knarf at cct.lsu.edu (Frank Loeffler (knarf)) Date: Wed, 9 Dec 2009 19:23:02 +0000 Subject: [Cactus-thorns-cvs] DEVELOPMENT CVS "CactusIO/IOSDF/src Output1D.c Output2D.c Output3D.c" Message-ID: <20091209192302.ABC3A2C001@asylum.cct.lsu.edu> Update of /cactusdevcvs/CactusIO/IOSDF/src In directory asylum.cct.lsu.edu:/tmp/cvs-serv28838 Modified Files: Output1D.c Output2D.c Output3D.c Log Message: Adapt to the new parsing API in IOUtil